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R Tab

R Tab ChIP

  R tab was included to allow for easy integration of specialized tools into Wardrobe. It can be used to run R code within Wardrobe. Currently default code creates pileup vs. peak rank graphs and peak length histogram for ChIP-Seq. Additionally, this window is used to output plots produced by MACS.

R Tab RNA

  For RNA-Seq, the default R code creates gene body coverage and RPKM histogram.

R Tab Sources

  Custom R code can be edited by administrators in the Source tab. Please see help file for the Wardrobe R library for reference.

Fig1.png - R Tab ChIP (101 KB) Andrey Kartashov, 05/09/2015 03:56 PM

Fig2.png - R Tab RNA (51.5 KB) Andrey Kartashov, 05/09/2015 04:07 PM

Fig3.png - R Tab Sources (252 KB) Andrey Kartashov, 05/09/2015 04:07 PM